Barstow Research Team

Department of Biological and Environmental Engineering, Cornell University

Software

You can find links for source code to all of our software on GitHub. Here are some of the most notable:

  • Knockout Sudoku is a method for very rapid, very low-cost construction of whole genome knockout collections. You can find the software needed to implement the method at GitHub and a step by step protocol at PeerJPreprints.
  • RewiredCarbon is a suite of programs for estimating the efficiency of electromicrobial production (aka microbial electrosynthesis, rewired carbon fixation). You can find the software implememtation of this framework at GitHub.
  • Macroscope Image Analyzer is a suite of programs for analysis of photographic high throughput screening data.
  • EMP to Branched Jet. Code for calculating efficiency of electromicrobial production of jet fuel blends containing branched chain alkanes.
  • EMP to Jet. Code for calculating efficiency of electromicrobial production of jet fuel blends containing straight-chain alkanes and aromatics.
  • Electrofoods. Code to calculate efficiency of electromicrobial production of amino acids.
  • ElectroCO2. Code for design study of electromicrobially-accelerated CO2 mineralization.